It looks like you ran into a device conflict issue after adding the NVMe SSD to your Seeed R2000, which caused the Hailo accelerator to fail with:
hailo 0000:06:00.0: Failed to enable MSI -28
hailo 0000:06:00.0: Failed enabling interrupts -28
The -28 error typically maps to ENOSPC (No space left on device), which often means that system resources like interrupt lines or MSI (Message Signalled Interrupts) are exhausted or misconfigured—likely due to the addition of the NVMe device.
Then, after you did a full upgrade, the Hailo device started working—but now the NVMe is not detected by lsblk.